Resources

Atlases of animal models of colitis:

• Adoptive Transfer Model Atlas (PDF)
• Histology Scoring Sheet (Excel)
• Others under construction (DNBS, Samp/yit1, ....)

Powerpoint on preparing tissue for histology:

• Powerpoint Presentation

Histology Software:

• Hamamatsu/NDP (matches format for scanned files from microscopy core, good for photos of images
• Aperio (can be used with NDP files, good for photos of images)
• QuPath (most powerful, accepts all files, has a steeper learning curve)
• Zeiss (link to download Zen Blue Free Microscope Software, ZEN lite from Carl Zeiss Microscopy USA)